Index

A

add_metadata_columns() (in module aopy.data.db) advance_plot_color() (in module aopy.visualization.base) align_neuropixel_recoring_drive() (in module aopy.data.base) align_spatial_maps() (in module aopy.analysis.base) angle_between() (in module aopy.analysis.behavior) animate_behavior() (in module aopy.visualization.animation) animate_cursor_eye() (in module aopy.visualization.animation) animate_events() (in module aopy.visualization.animation) animate_spatial_map() (in module aopy.visualization.animation) animate_trajectory_3d() (in module aopy.visualization.animation) annotate_spatial_map() (in module aopy.visualization.base) annotate_spatial_map_channels() (in module aopy.visualization.base) aopy.analysis.base module aopy.analysis.behavior module aopy.analysis.celltype module aopy.analysis.connectivity module aopy.analysis.kfdecoder module aopy.analysis.latency module aopy.analysis.tuning module aopy.data.base module aopy.data.bmi3d module aopy.data.db module aopy.data.eye module aopy.data.neuropixel module aopy.data.optitrack module aopy.data.peslab module

aopy.postproc.base module aopy.postproc.bmi3d module aopy.postproc.eye module aopy.postproc.neuropixel module aopy.precondition.base module aopy.precondition.eye module aopy.preproc.base module aopy.preproc.bmi3d module aopy.preproc.neuropixel module aopy.preproc.oculomatic module aopy.preproc.optitrack module aopy.preproc.quality module aopy.preproc.wrappers module aopy.torch module aopy.utils.base module aopy.utils.memory module aopy.visualization.animation module aopy.visualization.base module aopy.visualization.bmi3d module apply_noise_cutoff_thresh() (in module aopy.postproc.neuropixel)

B

bad_channel_detection() (in module aopy.preproc.quality) bin_spike_times() (in module aopy.precondition.base) bin_spikes() (in module aopy.precondition.base)

BMI3DDecoder (class in aopy.data.db) BMI3DTaskEntry (class in aopy.data.db) butterworth_filter_data() (in module aopy.precondition.base) butterworth_params() (in module aopy.precondition.base)

C

calc_accllr_lfp() (in module aopy.analysis.latency) calc_accllr_performance() (in module aopy.analysis.latency) calc_accllr_roc() (in module aopy.analysis.latency) calc_accllr_st() (in module aopy.analysis.latency) calc_accllr_st_single_ch() (in module aopy.analysis.latency) calc_confidence_interval_overlap() (in module aopy.analysis.base) calc_connectivity_coh() (in module aopy.analysis.connectivity) calc_connectivity_map_coh() (in module aopy.analysis.connectivity) calc_corr2_map() (in module aopy.analysis.base) calc_corr_over_elec_distance() (in module aopy.analysis.base) calc_cwt_tfr() (in module aopy.analysis.base) calc_data_map() (in module aopy.visualization.base) calc_delong_roc_variance() (in module aopy.analysis.latency) calc_dprime() (in module aopy.analysis.tuning) calc_erp() (in module aopy.analysis.base) calc_euclid_dist_mat() (in module aopy.utils.base) calc_eye_calibration() (in module aopy.preproc.base) calc_eye_target_calibration() (in module aopy.preproc.base) calc_fdrc_ranktest() (in module aopy.analysis.base) calc_freq_domain_amplitude() (in module aopy.analysis.base) calc_freq_domain_values() (in module aopy.analysis.base) calc_ft_tfr() (in module aopy.analysis.base) calc_ISI() (in module aopy.analysis.base) calc_itpc() (in module aopy.analysis.base) calc_ks_waveforms() (in module aopy.precondition.base) calc_llr_gauss() (in module aopy.analysis.latency) calc_max_erp() (in module aopy.analysis.base) calc_mt_psd() (in module aopy.analysis.base) calc_mt_tfcoh() (in module aopy.analysis.base) calc_mt_tfr() (in module aopy.analysis.base) calc_presence_ratio() (in module aopy.postproc.neuropixel) calc_radial_dist() (in module aopy.utils.base) calc_reward_intervals() (in module aopy.postproc.base) calc_rms() (in module aopy.analysis.base) calc_rolling_average() (in module aopy.analysis.base) calc_segment_duration() (in module aopy.analysis.behavior) calc_sem() (in module aopy.analysis.base) calc_spatial_data_correlation() (in module aopy.analysis.base) calc_spatial_map_correlation() (in module aopy.analysis.base) calc_spatial_tf_data_correlation() (in module aopy.analysis.base) calc_spike_threshold() (in module aopy.precondition.base) calc_stat_over_angle_from_pos() (in module aopy.analysis.base) calc_stat_over_dist_from_pos() (in module aopy.analysis.base) calc_statistic_random_trials() (in module aopy.analysis.base) calc_success_percent() (in module aopy.analysis.behavior)

calc_success_percent_trials() (in module aopy.analysis.behavior) calc_success_rate() (in module aopy.analysis.behavior) calc_success_rate_trials() (in module aopy.analysis.behavior) calc_task_rel_dims() (in module aopy.analysis.base) calc_tfr_mean() (in module aopy.analysis.base) calc_tfr_mean_fdrc_ranktest() (in module aopy.analysis.base) calc_tracking_error() (in module aopy.analysis.behavior) calc_tracking_in_time() (in module aopy.analysis.behavior) calc_trial_bootstraps() (in module aopy.analysis.base) calc_tsa_mt_tfr() (in module aopy.analysis.base) calc_welch_psd() (in module aopy.analysis.base) channels (aopy.data.db.BMI3DDecoder property) choose_best_level() (in module aopy.analysis.latency) classify_by_lda() (in module aopy.analysis.base) classify_cells_spike_width() (in module aopy.analysis.celltype) classify_eye_events() (in module aopy.precondition.eye) classify_ks_unit() (in module aopy.preproc.neuropixel) color_targets() (in module aopy.visualization.base) color_targets_3D() (in module aopy.visualization.base) color_trajectories() (in module aopy.visualization.base) combine_channel_figures() (in module aopy.visualization.base) compare_conditions_bootstrap_spatial_corr() (in module aopy.analysis.base) compute_bp_filter() (in module aopy.precondition.base) compute_midrank() (in module aopy.analysis.latency) compute_movement_error() (in module aopy.analysis.behavior) compute_movement_stats() (in module aopy.analysis.behavior) compute_path_length_per_trajectory() (in module aopy.analysis.behavior) compute_pulse_duty_cycles() (in module aopy.utils.base) concat_neuropixels() (in module aopy.preproc.neuropixel) convert_analog_to_digital() (in module aopy.utils.base) convert_channels_to_digital() (in module aopy.utils.base) convert_channels_to_mask() (in module aopy.utils.base) convert_digital_to_channels() (in module aopy.utils.base) convert_port_number() (in module aopy.utils.base) convert_pos_to_accel() (in module aopy.precondition.eye) convert_pos_to_speed() (in module aopy.precondition.eye) convert_raw_to_world_coords() (in module aopy.postproc.bmi3d) convert_taper_parameters() (in module aopy.precondition.base) convert_target_to_direction() (in module aopy.analysis.tuning) copy_edges_forwards() (in module aopy.utils.base) correlate_trajectories() (in module aopy.analysis.behavior) count_repetitions() (in module aopy.utils.base) count_unique_symbols() (in module aopy.utils.base) create_decoder_parent() (in module aopy.data.db) curve_fitting_func() (in module aopy.analysis.tuning)

D

decode_event() (in module aopy.preproc.bmi3d) decode_events() (in module aopy.preproc.bmi3d) decoder (aopy.data.db.BMI3DDecoder property) derivative() (in module aopy.utils.base) destripe_lfp_batch() (in module aopy.preproc.neuropixel) detect_accllr() (in module aopy.analysis.latency) detect_accllr_fast() (in module aopy.analysis.latency) detect_bad_ch_outliers() (in module aopy.preproc.quality) detect_bad_exp_data() (in module aopy.preproc.quality) detect_bad_timepoints() (in module aopy.preproc.quality) detect_bad_trials() (in module aopy.preproc.quality) detect_edges() (in module aopy.utils.base)

detect_erp_response() (in module aopy.analysis.latency) detect_eye_events() (in module aopy.precondition.eye) detect_itpc_response() (in module aopy.analysis.latency) detect_noise() (in module aopy.preproc.oculomatic) detect_saccades() (in module aopy.precondition.eye) detect_spikes() (in module aopy.precondition.base) detect_spikes_chunk() (in module aopy.precondition.base) digitize_by_angle() (in module aopy.utils.base) downsample() (in module aopy.precondition.base) dp_proj() (in module aopy.precondition.base) dpsschk() (in module aopy.precondition.base) duration (aopy.data.db.BMI3DTaskEntry property)

E

encode_onehot_sequence_name() (in module aopy.data.db) experimenter (aopy.data.db.BMI3DTaskEntry property) extract_barcodes_from_times() (in module aopy.utils.base)

extract_bits() (in module aopy.utils.base) extract_ks_template_amplitudes() (in module aopy.postproc.neuropixel) extract_lfp_features() (in module aopy.data.bmi3d)

F

factor_analysis_dimensionality_score() (in module aopy.analysis.base) features (aopy.data.db.BMI3DTaskEntry property) fill_missing_timestamps() (in module aopy.preproc.base) filt (aopy.data.db.BMI3DDecoder property) filter_eye() (in module aopy.precondition.eye) filter_has_features() (in module aopy.data.db) filter_has_neural_data() (in module aopy.data.db) filter_kinematics() (in module aopy.precondition.base) filter_lfp() (in module aopy.precondition.base) filter_lfp_from_broadband() (in module aopy.data.bmi3d) filter_lfp_from_ecube() (in module aopy.data.bmi3d)

filter_spike_times() (in module aopy.precondition.base) filter_spike_times_fast() (in module aopy.precondition.base) filter_spikes() (in module aopy.precondition.base) find_measured_event_times() (in module aopy.preproc.base) find_outliers() (in module aopy.analysis.base) find_preproc_ids_from_day() (in module aopy.data.base) find_trough_peak_idx() (in module aopy.analysis.celltype) first_nonzero() (in module aopy.utils.base) fit() (aopy.analysis.kfdecoder.KFDecoder method) fit_awf() (aopy.analysis.kfdecoder.KFDecoder method) fit_linear_regression() (in module aopy.analysis.base)

G

generate_multichannel_test_signal() (in module aopy.utils.base) generate_poisson_timestamps() (in module aopy.utils.base) generate_test_signal() (in module aopy.utils.base) get() (aopy.data.db.BMI3DDecoder method) get_aba_perturbation_days() (in module aopy.data.db) get_aba_perturbation_sessions() (in module aopy.data.db) get_acq_ch_near_stimulation_site() (in module aopy.analysis.connectivity) get_animate_circles_func() (in module aopy.visualization.animation) get_bandpower_feats() (in module aopy.analysis.base) get_calibrated_eye_data() (in module aopy.postproc.base) get_channel_bank_name() (in module aopy.data.neuropixel) get_closest_value() (in module aopy.preproc.base) get_color_gradient_RGB() (in module aopy.visualization.base) get_conditioned_trials_per_target() (in module aopy.postproc.base) get_confidence_interval() (in module aopy.analysis.base) get_consecutive_days() (in module aopy.utils.base) get_cursor_leave_time() (in module aopy.analysis.behavior) get_data_map() (in module aopy.visualization.base) get_data_segment() (in module aopy.preproc.base) get_data_segments() (in module aopy.preproc.base) get_db_object() (aopy.data.db.BMI3DTaskEntry method) get_dch_data() (in module aopy.preproc.base) get_decoded_states() (in module aopy.data.bmi3d) get_decoder() (aopy.data.db.BMI3DTaskEntry method) get_decoder_record() (aopy.data.db.BMI3DTaskEntry method) get_default_parameters() (in module aopy.precondition.eye) get_e3v_video_frame_data() (in module aopy.data.bmi3d) get_ecube_data_sources() (in module aopy.data.bmi3d) get_ecube_digital_input_times() (in module aopy.data.bmi3d) get_edges_from_onsets() (in module aopy.utils.base) get_empirical_pvalue() (in module aopy.analysis.base) get_exp_mapping() (aopy.data.db.BMI3DTaskEntry method) get_exp_var() (in module aopy.data.peslab) get_extracted_features() (in module aopy.data.bmi3d) get_eye_event_trials() (in module aopy.precondition.eye) get_filenames_in_dir() (in module aopy.data.base) get_first_last_times() (in module aopy.utils.base) get_hdf_dictionary() (in module aopy.data.base) get_high_amplitude_units() (in module aopy.postproc.neuropixel) get_incremental_world_to_screen_mappings() (in module aopy.postproc.bmi3d) get_inst_target_dir() (in module aopy.postproc.base) get_interp_task_data() (in module aopy.data.bmi3d) get_kilosort_foldername() (in module aopy.data.base) get_kinematic_segments() (in module aopy.data.bmi3d) get_kinematics() (in module aopy.data.bmi3d) get_laser_trial_times() (in module aopy.preproc.bmi3d) get_lfp_aligned() (in module aopy.data.bmi3d) get_lfp_segments() (in module aopy.data.bmi3d)

get_max_erp() (in module aopy.analysis.base) get_mean_fr_per_condition() (in module aopy.analysis.tuning) get_measured_clock_timestamps() (in module aopy.preproc.base) get_memory_available_gb() (in module aopy.utils.memory) get_memory_limit_gb() (in module aopy.utils.memory) get_minimum_trials_per_target() (in module aopy.postproc.base) get_modulation_depth() (in module aopy.analysis.tuning) get_movement_onset() (in module aopy.analysis.behavior) get_neuropixel_digital_input_times() (in module aopy.data.neuropixel) get_pca_dimensions() (in module aopy.analysis.base) get_peak_power_mW() (in module aopy.preproc.bmi3d) get_per_target_response() (in module aopy.analysis.tuning) get_preferred_direction() (in module aopy.analysis.tuning) get_preprocessed_filename() (in module aopy.data.base) get_preprocessed_sources() (aopy.data.db.BMI3DTaskEntry method) get_pulse_edge_times() (in module aopy.utils.base) get_random_timestamps() (in module aopy.analysis.base) get_raw_files() (aopy.data.db.BMI3DTaskEntry method) get_ref_dis_frequencies() (in module aopy.preproc.bmi3d) get_relative_point_location() (in module aopy.postproc.base) get_relevant_saccade_idx() (in module aopy.postproc.eye) get_saccade_event() (in module aopy.postproc.eye) get_saccade_pos() (in module aopy.postproc.eye) get_saccade_target_index() (in module aopy.postproc.eye) get_sequence_param() (aopy.data.db.BMI3DTaskEntry method) get_source_files() (in module aopy.data.bmi3d) get_spike_data_aligned() (in module aopy.data.bmi3d) get_spike_data_segment() (in module aopy.data.bmi3d) get_switched_stimulation_sites() (in module aopy.preproc.bmi3d) get_target_events() (in module aopy.preproc.bmi3d) get_target_locations() (in module aopy.data.bmi3d) get_task_data() (in module aopy.data.bmi3d) get_task_param() (aopy.data.db.BMI3DTaskEntry method) get_tfr_feats() (in module aopy.analysis.base) get_trajectory_frequencies() (in module aopy.data.bmi3d) get_trial_data() (in module aopy.preproc.base) get_trial_segments() (in module aopy.preproc.base) get_trial_segments_and_times() (in module aopy.preproc.base) get_trial_targets() (in module aopy.postproc.base) get_ts_data_segment() (in module aopy.data.bmi3d) get_ts_data_trial() (in module aopy.data.bmi3d) get_unique_conditions() (in module aopy.preproc.base) get_unit_spiking_mean_variance() (in module aopy.analysis.celltype) get_units_without_refractory_violations() (in module aopy.postproc.neuropixel) get_velocity_segments() (in module aopy.data.bmi3d) get_world_to_screen_mapping() (in module aopy.postproc.bmi3d) gradient_timeseries() (in module aopy.visualization.base) gradient_trajectories() (in module aopy.visualization.base) group_entries() (in module aopy.data.db)

H

has_exp_perturbation() (aopy.data.db.BMI3DTaskEntry method) has_feature() (aopy.data.db.BMI3DTaskEntry method)

high_freq_data_detection() (in module aopy.preproc.quality) histogram_defined_noise_levels() (in module aopy.preproc.quality)

I

interp_nans() (in module aopy.analysis.base) interp_timestamps2timeseries() (in module aopy.preproc.base)

interpolate_extremum_poly2() (in module aopy.analysis.base) is_table_in_hdf() (in module aopy.data.base)

K

KFDecoder (class in aopy.analysis.kfdecoder)

L

linear_fit_analysis2D() (in module aopy.analysis.base) list_entry_details() (in module aopy.data.db) list_root_groups() (in module aopy.data.base) load_bmi3d_hdf_table() (in module aopy.data.bmi3d) load_bmi3d_lasers() (in module aopy.data.bmi3d) load_bmi3d_root_metadata() (in module aopy.data.bmi3d) load_bmi3d_task_codes() (in module aopy.data.bmi3d) load_chmap() (in module aopy.data.base) load_ecog_clfp_data() (in module aopy.data.peslab) load_ecube_analog() (in module aopy.data.bmi3d) load_ecube_data() (in module aopy.data.bmi3d) load_ecube_data_chunked() (in module aopy.data.bmi3d) load_ecube_digital() (in module aopy.data.bmi3d) load_ecube_headstages() (in module aopy.data.bmi3d) load_ecube_metadata() (in module aopy.data.bmi3d) load_electrode_pos() (in module aopy.data.base) load_emg_analog() (in module aopy.data.bmi3d) load_emg_data() (in module aopy.data.bmi3d) load_emg_digital() (in module aopy.data.bmi3d) load_experiment_data() (in module aopy.data.peslab) load_hdf_data() (in module aopy.data.base) load_hdf_group() (in module aopy.data.base) load_hdf_ts_segment() (in module aopy.data.base) load_hdf_ts_trial() (in module aopy.data.base) load_mask_data() (in module aopy.data.peslab) load_matlab_cell_strings() (in module aopy.data.base) load_neuropixel_configuration() (in module aopy.data.neuropixel)

load_neuropixel_data() (in module aopy.data.neuropixel) load_neuropixel_event() (in module aopy.data.neuropixel) load_optitrack_data() (in module aopy.data.optitrack) load_optitrack_metadata() (in module aopy.data.optitrack) load_optitrack_time() (in module aopy.data.optitrack) load_parsed_ksdata() (in module aopy.data.neuropixel) load_preproc_analog_data() (in module aopy.data.base) load_preproc_ap_data() (in module aopy.data.base) load_preproc_broadband_data() (in module aopy.data.base) load_preproc_digital_data() (in module aopy.data.base) load_preproc_emg_data() (in module aopy.data.base) load_preproc_exp_data() (in module aopy.data.base) load_preproc_eye_data() (in module aopy.data.base) load_preproc_lfp_data() (in module aopy.data.base) load_preproc_spike_data() (in module aopy.data.base) load_spike_waveforms() (in module aopy.data.base) load_yaml_config() (in module aopy.data.base) locate_trials_with_event() (in module aopy.preproc.base) lookup_acq2elec() (in module aopy.data.base) lookup_bmi_sessions() (in module aopy.data.db) lookup_decoder_parent() (in module aopy.data.db) lookup_decoders() (in module aopy.data.db) lookup_elec2acq() (in module aopy.data.base) lookup_excel_value() (in module aopy.data.base) lookup_flash_sessions() (in module aopy.data.db) lookup_mc_sessions() (in module aopy.data.db) lookup_sessions() (in module aopy.data.db) lookup_tracking_sessions() (in module aopy.data.db)

M

map_acq2elec() (in module aopy.data.base) map_acq2pos() (in module aopy.data.base) map_data2elec() (in module aopy.data.base) map_data2elecandpos() (in module aopy.data.base) map_elec2acq() (in module aopy.data.base) max_repeated_nans() (in module aopy.utils.base) mean_fr_inst_dir() (in module aopy.postproc.base) model (aopy.analysis.kfdecoder.KFDecoder attribute) module aopy.analysis.base aopy.analysis.behavior aopy.analysis.celltype aopy.analysis.connectivity aopy.analysis.kfdecoder aopy.analysis.latency aopy.analysis.tuning aopy.data.base aopy.data.bmi3d aopy.data.db aopy.data.eye aopy.data.neuropixel aopy.data.optitrack aopy.data.peslab aopy.postproc.base aopy.postproc.bmi3d aopy.postproc.eye aopy.postproc.neuropixel aopy.precondition.base aopy.precondition.eye aopy.preproc.base aopy.preproc.bmi3d aopy.preproc.neuropixel aopy.preproc.oculomatic aopy.preproc.optitrack aopy.preproc.quality aopy.preproc.wrappers aopy.torch aopy.utils.base aopy.utils.memory aopy.visualization.animation aopy.visualization.base aopy.visualization.bmi3d

mt_bandpass_filter() (in module aopy.precondition.base) mt_lowpass_filter() (in module aopy.precondition.base) mtfilter() (in module aopy.precondition.base) multiply_mat_batch() (in module aopy.utils.base)

N

n_rewards (aopy.data.db.BMI3DTaskEntry property) n_trials (aopy.data.db.BMI3DTaskEntry property)

nextpow2() (in module aopy.utils.base) notes (aopy.data.db.BMI3DTaskEntry property)

O

overlay_image_on_spatial_map() (in module aopy.visualization.base)

overlay_sulci_on_spatial_map() (in module aopy.visualization.base)

P

parse_bmi3d() (in module aopy.preproc.bmi3d) parse_file_info() (in module aopy.data.peslab) parse_ksdata_entries() (in module aopy.preproc.neuropixel) parse_oculomatic() (in module aopy.preproc.oculomatic) parse_optitrack() (in module aopy.preproc.optitrack) parse_str_list() (in module aopy.data.base) pkl_read() (in module aopy.data.base) pkl_write() (in module aopy.data.base) place_Opto32_subplots() (in module aopy.visualization.base) place_subplots() (in module aopy.visualization.base) plot_3D_as_2D() (in module aopy.visualization.base) plot_angles() (in module aopy.visualization.base) plot_annotated_spatial_drive_map_stim() (in module aopy.visualization.base) plot_annotated_stim_drive_data() (in module aopy.visualization.base) plot_boxplots() (in module aopy.visualization.base) plot_channel_summary() (in module aopy.visualization.base) plot_circles() (in module aopy.visualization.base) plot_circular_hist() (in module aopy.visualization.base) plot_colorbar() (in module aopy.visualization.base) plot_condition_tuning() (in module aopy.visualization.base) plot_corr_across_entries() (in module aopy.visualization.base) plot_corr_over_elec_distance() (in module aopy.visualization.base) plot_decoder_summary() (in module aopy.visualization.bmi3d) plot_decoder_weight_matrix() (in module aopy.visualization.bmi3d) plot_decoder_weight_vectors() (in module aopy.visualization.bmi3d) plot_direction_tuning() (in module aopy.visualization.base) plot_ECoG244_data_map() (in module aopy.visualization.base) plot_events_time() (in module aopy.visualization.base) plot_freq_domain_amplitude() (in module aopy.visualization.base) plot_image_by_time() (in module aopy.visualization.base) plot_laser_sensor_alignment() (in module aopy.visualization.base) plot_mean_fr_per_target_direction() (in module aopy.visualization.base) plot_plane() (in module aopy.visualization.base) plot_raster() (in module aopy.visualization.base)

plot_readout_map() (in module aopy.visualization.bmi3d) plot_scalebar() (in module aopy.visualization.base) plot_sessions_by_date() (in module aopy.visualization.base) plot_sessions_by_trial() (in module aopy.visualization.base) plot_spatial_drive_map() (in module aopy.visualization.base) plot_spatial_drive_maps() (in module aopy.visualization.base) plot_spatial_map() (in module aopy.visualization.base) plot_sphere() (in module aopy.visualization.base) plot_targets() (in module aopy.visualization.base) plot_tf_map_grid() (in module aopy.visualization.base) plot_tfr() (in module aopy.visualization.base) plot_timeseries() (in module aopy.visualization.base) plot_trajectories() (in module aopy.visualization.base) plot_tuning_curves() (in module aopy.visualization.base) plot_waveforms() (in module aopy.visualization.base) plot_xy_scalebar() (in module aopy.visualization.base) predict() (aopy.analysis.kfdecoder.KFDecoder method) prepare_erp() (in module aopy.analysis.connectivity) (in module aopy.analysis.latency) preprocess() (aopy.data.db.BMI3DTaskEntry method) print_progress_bar() (in module aopy.utils.base) proc_ap() (in module aopy.preproc.wrappers) proc_broadband() (in module aopy.preproc.wrappers) proc_ecube_data() (in module aopy.data.bmi3d) proc_emg() (in module aopy.preproc.wrappers) proc_exp() (in module aopy.preproc.wrappers) proc_eye_day() (in module aopy.data.eye) proc_eyetracking() (in module aopy.preproc.wrappers) proc_lfp() (in module aopy.preproc.wrappers) proc_mocap() (in module aopy.preproc.wrappers) proc_neuropixel_spikes() (in module aopy.preproc.neuropixel) proc_neuropixel_ts() (in module aopy.preproc.neuropixel) proc_single() (in module aopy.preproc.wrappers) proc_spikes() (in module aopy.preproc.wrappers) profile_data_channels() (in module aopy.visualization.base)

R

read_from_file() (in module aopy.data.peslab) read_from_start() (in module aopy.data.peslab) recursive_assign_device() (in module aopy.torch) reindex_targets() (in module aopy.utils.base)

release_memory_limit() (in module aopy.utils.memory) reset_plot_color() (in module aopy.visualization.base) rotate_spatial_data() (in module aopy.postproc.base) run_tuningcurve_fit() (in module aopy.analysis.tuning)

S

sample_events() (in module aopy.postproc.base) sample_timestamped_data() (in module aopy.preproc.base) saturated_data_detection() (in module aopy.preproc.quality) save_decoder() (in module aopy.data.db) save_hdf() (in module aopy.data.base) save_test_signal_ecube() (in module aopy.utils.base) saveanim() (in module aopy.visualization.animation) savefig() (in module aopy.visualization.base) scale_data_by_p_value() (in module aopy.utils.base) segment_array() (in module aopy.utils.base) sequence_name (aopy.data.db.BMI3DTaskEntry property)

sequence_params (aopy.data.db.BMI3DTaskEntry property) set_bounds() (in module aopy.visualization.base) set_memory_limit_gb() (in module aopy.utils.memory) showanim() (in module aopy.visualization.animation) simulate_ideal_trajectories() (in module aopy.analysis.base) smooth_timeseries_gaus() (in module aopy.postproc.base) subplots_with_labels() (in module aopy.visualization.base) subtract_erp_baseline() (in module aopy.analysis.base) summarize_entries() (in module aopy.data.db) sync_neuropixel_ecube() (in module aopy.preproc.neuropixel) sync_timestamp_offline() (in module aopy.utils.base) sync_ts_data_timestamps() (in module aopy.preproc.neuropixel)

T

tabulate_behavior_data() (in module aopy.data.bmi3d) tabulate_behavior_data_center_out() (in module aopy.data.bmi3d) tabulate_behavior_data_corners() (in module aopy.data.bmi3d) tabulate_behavior_data_flash() (in module aopy.data.bmi3d) tabulate_behavior_data_out() (in module aopy.data.bmi3d) tabulate_behavior_data_random_targets() (in module aopy.data.bmi3d) tabulate_behavior_data_tracking_task() (in module aopy.data.bmi3d) tabulate_feature_data() (in module aopy.data.bmi3d) tabulate_kinematic_data() (in module aopy.data.bmi3d) tabulate_lfp_features() (in module aopy.data.bmi3d) tabulate_poisson_trial_times() (in module aopy.data.bmi3d) tabulate_spike_data_segments() (in module aopy.data.bmi3d) tabulate_state_data() (in module aopy.data.bmi3d)

tabulate_stim_data() (in module aopy.data.bmi3d) tabulate_task_data() (in module aopy.data.bmi3d) tabulate_ts_data() (in module aopy.data.bmi3d) tabulate_ts_segments() (in module aopy.data.bmi3d) task_desc (aopy.data.db.BMI3DTaskEntry property) task_name (aopy.data.db.BMI3DTaskEntry property) task_params (aopy.data.db.BMI3DTaskEntry property) TensorDataset (class in aopy.torch) time_to_target() (in module aopy.analysis.behavior) translate_spatial_data() (in module aopy.postproc.base) trial_align_data() (in module aopy.preproc.base) trial_align_events() (in module aopy.preproc.base) trial_align_times() (in module aopy.preproc.base) trial_separate() (in module aopy.preproc.base)

U

unit_vector() (in module aopy.analysis.behavior)

V

validate_measurements() (in module aopy.preproc.base)

vector_angle() (in module aopy.analysis.behavior)

W

windowed_xval_lda_wrapper() (in module aopy.analysis.base)

X

xval_lda_subsample_wrapper() (in module aopy.analysis.base)

Y

yaml_read() (in module aopy.data.base)

yaml_write() (in module aopy.data.base)